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It contains a DExD/H-box RNA helicase domain and a C-terminal domain (CTD) that bind dsRNA, along with two N-terminal caspase activation and recruitment domains (CARDs) that interact with the mitochondrial antiviral signaling protein (MAVS) to induce transcription of type I IFNs and downstream IFN-stimulated genes (ISGs) (99, 103)
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These sequences were then run through an R script (Supplementary Materials, bash_DADA2 + IDTAXA_workflow_Illumina-PairedEnd_V1V3.R) which trimmed reverse reads to 260 bp, removed forward reads exceeding a maximum expected error of three, and truncated reverse reads exceeding a maximum expected error of six